FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004913931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004913931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14934764
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCCGAC48650.051.365558
TCCGACC49250.050.1610039
TTTCCGA62300.040.492597
CCCCGTT36700.039.8829772
CCCCCGT28350.037.884341
GTTTCCG56050.037.5475166
CCCGTTA19800.036.243543
CCGTTTC67600.035.775344
CGGGGAT90850.035.6115848
CTCCGTT55350.035.202152
GTCCCGT18250.035.154041
GTTCCGT19650.035.06791
TCCGTTT69450.034.830883
GCCCCGT28800.034.8172381
TCGGGGA93650.034.5468447
GCTCCGT48100.034.2837871
CGTTTCC64050.033.304775
TGTCGGG21250.032.641735
TCCCCGT37000.031.467971
CCCGTTT48000.030.3959733
Produced by FastQC (version 0.11.5)