FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004913976

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004913976
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12293323
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCA431810.3512557182464009No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTCATTCATCTCGTATG406990.33106589650332946TruSeq Adapter, Index 3 (97% over 36bp)
TCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCA147480.11996756287945903No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)