EGAF00004913991 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004913991
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12954892
Sequences flagged as poor quality	0
Sequence length	101
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	147418	1.1379330680641722	Illumina Single End PCR Primer 1 (100% over 50bp)
GAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGC	19066	0.14717220336533876	Illumina Single End PCR Primer 1 (100% over 49bp)
TGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCG	15912	0.1228261879759399	Illumina Single End PCR Primer 1 (100% over 48bp)
GGCTGGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTG	13446	0.10379090771270034	Illumina Single End PCR Primer 1 (100% over 44bp)
TAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGC	13330	0.10289549306933628	Illumina Single End PCR Primer 1 (100% over 49bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGCGTTA	2045	52.049347	1
GGTGTGC	22450	43.375095	6
CGGTGTG	8020	42.301834	5
GGCCGTA	2115	41.78911	1
CCGGTGT	4530	40.91087	4
CGTTAGA	4615	40.877663	3
GTGCTCT	37355	39.520447	9
TGTGCTC	37195	39.51242	8
GCCGTTA	1535	39.00522	1
GCGTTAG	3225	38.60458	2
GGCGTAG	3910	34.636074	1
CCGTTAG	1720	34.257885	2
GTGTGCT	44255	34.19687	7
CGTGAGA	5670	34.109756	3
CCGTAGA	4010	33.654354	3
CCCCCGT	2360	32.618465	1
GTCCCGT	1770	32.484234	1
CCCGAGA	3410	32.19029	3
CCGTTTA	1715	32.141502	4
GCCGTAG	3405	31.679333	2