FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004914082

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004914082
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11271908
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGACCG9250.043.138113
TGCGACA18650.036.6756944
GCGACAT20700.033.270375
CCGCTCG12450.032.4267777
GCTCGCG12600.032.040749
CGACCGC14200.028.7676754
CTGCGAC24850.027.909373
CTAGGCG48800.027.0569737
CTCGACC15500.025.7443962
TAGGCGG52300.024.9738318
CGCGTCG8400.024.5964212-13
GCTGCGA29550.024.4355012
CGACATC29100.023.8297716
CTCGCGT9000.022.95630310-11
CCTCGAC18800.021.9863131
TCGCGTC9400.021.97943710-11
GTCGCAT9600.021.76943614-15
GACCGCT20150.021.6856675
GCTAGGC63500.021.3920446
CGTCGCA9900.020.6299914-15
Produced by FastQC (version 0.11.5)