FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004914083

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004914083
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11271908
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCCCGT17800.035.5137021
CCGTTAA13300.033.6062364
CCCCGTT31700.032.7063142
CCCCGTA17550.030.8931432
CCCCCGT27450.029.7817671
CGGGGAT45050.029.2282818
CCCGTTA15800.029.1977253
GCCCCGT20400.029.1235431
CCCGTTT38900.028.8533843
TCCCCGT33750.028.7290121
TCCGACC20050.028.1952029
CCGTTTA19850.028.0265124
TTCCGAC19850.027.7789488
CCCCGAA30600.027.5097242
CCGTTAT12500.026.6275834
GTTCCGT15900.026.604631
CGATCGG23100.025.80403986-87
GCCGTTA7950.025.7238333
CCCGTAA17650.025.5984253
GGTCCGT13950.025.553561
Produced by FastQC (version 0.11.5)