FastQCFastQC Report
Thu 12 May 2022
EGAF00004914106

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004914106
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23821598
Sequences flagged as poor quality0
Sequence length101
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCC510770.2144146668917845No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG438190.18394651777769064No Hit
GGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTTGGCTGATC298760.12541559974272087No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)