FastQCFastQC Report
Thu 12 May 2022
EGAF00004914385

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004914385
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25076068
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGTGGTAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGG781080.3114842406712249No Hit
ATGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCGCGGGT610060.24328375565100557No Hit
ATGGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCT511820.2041069596716678No Hit
ATTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACT368890.1471083903584884No Hit
ATTGGTGTTAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGG364060.1451822510610515No Hit
ATGGTGGTAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGA335200.133673269668913No Hit
ATTGGTGATAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGG302860.12077651089477026No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)