FastQCFastQC Report
Sat 4 Jun 2022
EGAF00004914493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004914493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30311127
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGTGGTAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGG1349260.44513686343632164No Hit
ATGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCGCGGGT1216770.40142684236056286No Hit
ATGGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCT945420.31190526172121547No Hit
ATTGGTGTTAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGG699080.23063477646344194No Hit
ATGGTGGTAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGA626030.2065347157827553No Hit
ATTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACT583090.19236830092130855No Hit
ATTGGTGATAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGG554970.1830911796846089No Hit
ATTGGTGCTAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGG452760.14937088944267893No Hit
ATTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCT431000.14219200757530392No Hit
ATGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAA422390.1393514665423031No Hit
ATGGCACGGTGAAGAGACATGAGAGGTGTAGAATAAGTGGGAGGCCCCCG379500.12520154727338248No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)