FastQCFastQC Report
Fri 1 Jul 2022
EGAF00004914496

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004914496
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24036582
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCCCTCC918550.38214667959030113No Hit
ATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCT655700.27279252932051656No Hit
GCACGAATGGCGTAACGATGGCCACACTGTCTCCTCCCGAGACTCAGCGA655590.27274676574231727No Hit
GGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATC483380.20110180390872545No Hit
AACCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGG379760.15799251324501962No Hit
GGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCC324290.13491518885671847No Hit
ACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTTCTGGGCT319760.133030561499967No Hit
AGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATT302900.12601625305960723No Hit
ACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTTCTGGGCT289750.12054542530214986No Hit
AGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCCCTCCCGAA278200.11574024959122725No Hit
CGCAAGGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTACATT261980.10899220196948137No Hit
GGGACAGTGCATGGTAGGCAGTTTGACTGGGGCGGTCTCCTCCCAAAGGG243280.10121239367560661No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)