FastQCFastQC Report
Sat 4 Jun 2022
EGAF00004914498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004914498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26710048
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCCCTCC969830.3630955661330148No Hit
ATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCT738770.2765887953477283No Hit
GCACGAATGGCGTAACGATGGCCACACTGTCTCCTCCCGAGACTCAGCGA721890.2702690762667293No Hit
GGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATC523430.19596745015209258No Hit
AACCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGG424860.15906373511571376No Hit
ACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTTCTGGGCT345010.12916861849143813No Hit
AGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATT337020.1261772348743065No Hit
GGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCC335810.12572422183591733No Hit
ACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTTCTGGGCT315430.11809413446205713No Hit
AGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCCCTCCCGAA305660.11443633497027036No Hit
CGCAAGGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTACATT287140.10750261474633067No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)