FastQCFastQC Report
Fri 1 Jul 2022
EGAF00004914611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004914611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35868469
Sequences flagged as poor quality0
Sequence length101
%GC56

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCCGGCCGGG599890.16724717188235716No Hit
TGGTGGTAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGGAAAGGGG586580.16353639180975357No Hit
GGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAAACGGGGGAG567460.15820580465812467No Hit
GCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCCGGCCCGG527540.1470762524043053No Hit
GGGTCCTAACACGTGCGCTCGTGCTCCACCTCCCCGGCGCCGGGGGGGCG387670.10808100005606595No Hit
GGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGGCGGGAGC378130.10542128240823437No Hit
TTGTGAAGGGCAGGGCGCCCTGGAATGGGTTCGCCCCGAGAGGAGGGGGG363260.10127557995296649No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)