FastQCFastQC Report
Sat 18 Mar 2023
EGAF00004914663

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004914663
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53815593
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCGCGGGTAA959820.17835351177864006No Hit
TGGTGGTAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAG807610.15006988773681265No Hit
GGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCA750350.13942984889156568No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)