FastQCFastQC Report
Thu 12 May 2022
EGAF00004914707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004914707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27308019
Sequences flagged as poor quality0
Sequence length101
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCGCGGGTAA546260.20003648012695466No Hit
GGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCA498980.1827228844391825No Hit
TGGTGGTAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAG475200.17401481960298915No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)