FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004914793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004914793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15557320
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGACC32800.047.9993069
TTCCGAC33600.046.99768
TTTCCGA42750.037.271487
GCTCCGT36950.034.0226941
GCCCCGT25500.033.486491
CCCCGTT37000.033.207432
GTTTCCG39750.033.045796
GTCCCGT18450.031.883251
GTTCCGT20050.031.7049961
CTCCGTT45650.030.7601322
CCGTTTC59450.029.5961174
CCCGTTA15900.029.2426413
CCCCCGT30700.029.0507091
TCCGTTT66400.027.509353
GGTCCGT18750.026.8189561
GCCCGTT23250.026.5251392
CGATCGG20800.026.25416486-87
CCCGTTT49550.026.1400643
GACCCGT9850.026.0072731
CCGCGTT9000.025.8280032
Produced by FastQC (version 0.11.5)