FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004914891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004914891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112869
Sequences flagged as poor quality0
Sequence length101
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCGCGGGTAA2770.24541725363031477No Hit
TGGTGGTAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAG2330.20643400756629368No Hit
TGGTGTTAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAG1490.132011446898617No Hit
TGGTGATAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAG1320.11694973819206336No Hit
GCCCAGNGCTCTGANTGTCAAAGTGAAGAAATTCAATGAAGCGCGGGTAA1290.11429178959678919No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)