Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004915681 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5017947 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 31307 | 0.6239005712894138 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14446 | 0.28788665962394583 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11608 | 0.23132966529937443 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 27950 | 0.0 | 68.02564 | 1 |
GGTATCA | 12465 | 0.0 | 62.605522 | 1 |
CAACGCA | 38285 | 0.0 | 49.813454 | 5 |
ATCAACG | 38335 | 0.0 | 49.59345 | 3 |
AACGCAG | 38990 | 0.0 | 49.032246 | 6 |
TCAACGC | 39120 | 0.0 | 48.85655 | 4 |
TATCAAC | 39185 | 0.0 | 48.244675 | 2 |
ACGCAGA | 40845 | 0.0 | 46.761303 | 7 |
CGCAGAG | 41920 | 0.0 | 45.617493 | 8 |
GCAGAGT | 44710 | 0.0 | 42.717697 | 9 |
AGAGTAC | 43080 | 0.0 | 33.04358 | 10-11 |
CAGAGTA | 44010 | 0.0 | 30.52923 | 10-11 |
AGTACTT | 18070 | 0.0 | 28.232464 | 12-13 |
GAGTACT | 18020 | 0.0 | 26.991718 | 12-13 |
AGTACGG | 34210 | 0.0 | 26.68985 | 12-13 |
GTACTTT | 18485 | 0.0 | 26.25512 | 14-15 |
GCGTAAG | 675 | 0.0 | 25.534916 | 1 |
GAGTACG | 34555 | 0.0 | 24.832642 | 12-13 |
GTACGGG | 34845 | 0.0 | 24.024326 | 14-15 |
TACGGGT | 6305 | 0.0 | 23.677284 | 14-15 |