FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004916263

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004916263
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3613586
Sequences flagged as poor quality0
Sequence length125
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT100100.27701015002825446No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT51800.143347909804831No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT42220.1168368484934356No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC36810.10186557065474573No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)