FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004916302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004916302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7750192
Sequences flagged as poor quality0
Sequence length125
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATTTCACTGTCTCTTATACACATCTGACGCTGCCGACGACTCCTTACG1082891.3972428037911835No Hit
TTTTATGACTGTCTCTTATACACATCTGACGCTGCCGACGACTCCTTACG379220.4893040069200866No Hit
GTTTTGGGATGCCTTTTTCTCTGTATTTCACTGTCTCTTATACACATCTG378300.4881169395545297No Hit
GCCTTTTTCTCTGTATTTCACTGTCTCTTATACACATCTGACGCTGCCGA334890.4321054239688513No Hit
TTTTCTCTGTATTTCACTGTCTCTTATACACATCTGACGCTGCCGACGAC324190.418299314391179No Hit
CCTTTTTCTCTGTATTTCACTGTCTCTTATACACATCTGACGCTGCCGAC229290.2958507350527574No Hit
TTTCTCTGTATTTCACTGTCTCTTATACACATCTGACGCTGCCGACGACT160290.2068206826359915No Hit
CTGTATTTCACTGTCTCTTATACACATCTGACGCTGCCGACGACTCCTTA122960.15865413398790637No Hit
GGATTGACCTTTTTATGACTGTCTCTTATACACATCTGACGCTGCCGACG110380.14242227805453078No Hit
GGATGCCTTTTTCTCTGTATTTCACTGTCTCTTATACACATCTGACGCTG110330.14235776352379398No Hit
GTACGGGGGGTTGTTTTGGGATGCCTTTTTCTCTGTATTTCACTGTCTCT106810.1378159405599242No Hit
GGTATCAACGCAGAGTACGGGGGGTTGTTTTGGGATGCCTTTTTCTCTGT101390.13082256542805648No Hit
TGGTTGGATTGACCTTTTTATGACTGTCTCTTATACACATCTGACGCTGC101010.13033225499445691No Hit
GGGTTGTTTTGGGATGCCTTTTTCTCTGTATTTCACTGTCTCTTATACAC93980.12126151197286467No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)