FastQCFastQC Report
Tue 28 Jun 2022
EGAF00004916457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004916457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65325969
Sequences flagged as poor quality0
Sequence length150
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6309460.965842542649463No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3168620.4850475314036291No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3052610.46728889700817144No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2940160.4500752219993858No Hit
CCAAACATGGTGAGGAACATGGTGAAATTGATGGGGCCTGGAGCCTCATT1197010.18323647062931436No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1125900.17235105995901875No Hit
GGAACATGGTGAAATTGATGGGGCCTGGAGCCTCATTCATCATGGCATCT1117860.17112030898462446No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1041380.15941286687993866No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC769080.11772959693869983No Hit
GCTCATCCACTTCCTCATCTGTAAACCGATCCCCCATGGTTGTCAGCAGC706400.10813463784976537No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA680710.104202051713921No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)