FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004916614

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004916614
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7953961
Sequences flagged as poor quality0
Sequence length125
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT390150.4905103256100954No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT231290.2907859367175675No Hit
CTTCTATACTTCTCCAATACTTGTCTTAGCTTGTTTTTCATTTTCTATCT219420.2758625545184343No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA206910.2601345417710748No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT198920.25008923227056307No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA182490.229432857415318No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC168570.21193214299139762No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC136370.17144916853376577No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC134400.1689724151275069No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC128380.161403859033254No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC108330.13619629263960434No Hit
ATTTAAACCTGAAAAGTAGGAAGCAGAAGAAAAAAGACAAGCTAGGAAAC105990.13325436219765222No Hit
CTCCAATACTTGTCTTAGCTTGTTTTTCATTTTCTATCTGAAACTCTTGA95780.12041799048298076No Hit
ATACCAAAGAATATCCCAATTATCCATAAAACTGTAACTAAGTGAGGCTC88890.11175563973723279No Hit
GGTTTATACTTCAATATAAGCCTTGGTAGGGATAGATAGCCACCTATATA87180.10960576749119086No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA82920.10424994540456008No Hit
ATGTGATAGATGCCTCTTTAAAATATCTAAGTGCTGGGGTTATGAGTAGG81260.1021629349200983No Hit
GTCTTAGCTTGTTTTTCATTTTCTATCTGAAACTCTTGACAATATTTTCA80950.10177319199830123No Hit
GAATATATCCCATTTTTAGTTATAATGATGCCTTATGTGATAGATGCCTC80250.10089312733617879No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)