FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004916710

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004916710
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3615502
Sequences flagged as poor quality0
Sequence length125
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT100870.2789930692888567No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT87620.24234532300078937No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT73470.20320829583277783No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC63750.17632406232938053No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC60680.16783284866112644No Hit
ACACAGCACTGTGCAAACACGAAAGTGGACGTATACGGTGTGACGCCTGC58080.16064159278573212No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA57480.15898207219910265No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC45630.12620654061317074No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA42690.11807488973868635No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC41930.1159728303289557No Hit
CCATCATGCTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCC38940.10770288607225222No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)