EGAF00004917730 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004917730
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3228305
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

$Per base quality graph$

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23824	0.7379724034748885	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12674	0.3925899194778685	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8542	0.2645970563500041	No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC	5224	0.16181866335429893	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA	4182	0.12954166350453256	No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC	4140	0.12824067118813123	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3714	0.11504489197891772	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3379	0.10466792945524044	No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC	3375	0.10454402542510698	No Hit
GTCTTAGCAGTAGTTTATAAGGAATATATCCCATTTTTAGTTATAATGAT	3284	0.10172520873957076	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	5475	0.0	97.8566	1
GTATCAA	15590	0.0	71.44597	1
ATCAACG	20845	0.0	53.134636	3
TATCAAC	21325	0.0	52.16179	2
CAACGCA	21200	0.0	52.1607	5
TCAACGC	22460	0.0	49.393402	4
AACGCAG	23420	0.0	47.648125	6
ACGCAGA	25470	0.0	43.486115	7
CGCAGAG	25495	0.0	43.42014	8
GTACCGA	55	8.542045E-4	43.261066	6
GCAGAGT	26155	0.0	42.21076	9
GTACTGG	1895	0.0	34.593777	1
AAATACG	870	0.0	34.186184	5
GTTGTCG	195	3.8198777E-11	33.555054	3
ACGGGCC	925	0.0	32.153496	9
TACGTCA	75	0.003916691	31.724781	4
CAGAGTA	27420	0.0	29.850449	10-11
AGAGTAC	27830	0.0	28.70534	10-11
GGATTCG	85	0.007221768	27.992455	8
GTACTAG	490	0.0	27.973467	1