FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004918678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004918678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6563071
Sequences flagged as poor quality0
Sequence length125
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCTGTACTGTGTCAAATCGTTAAGAGCGAAGGAGGGACGCAGGAGGTG277300.4225156180696506No Hit
GTACAGGAATCTCTACCTGTTATCCATCGACTACGCCTCTCGGCCTCGCC230250.3508266176002057No Hit
TGGTAGGAGAGCGTTCTAAGAGCGGAGAAGTTGAATCGAGAGGATCAATG94660.1442312600305558No Hit
GTATCAACGCAGAGTACGGGTATGTCATCTCTGGCTAGAAGCTTTTCTTG94360.1437741569457347No Hit
TTTCTTGGCAGTGTGATTACCACACCTTCGCTACTTTTAATTCACTCCTC81110.12358543736613546No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN74110.11291969872030945No Hit
GTTTTAAAGAGCACGTGGTAGGAGAGCGTTCTAAGAGCGGAGAAGTTGAA72260.11010089636391257No Hit
GTACAGGAATCTCTACCTGTTATCCATCGACTACGCCTCTCGGCCTTGCC68770.10478326381049359No Hit
GAGTACGGGTATGTCATCTCTGGCTAGAAGCTTTTCTTGGCAGTGTGATT67000.10208635561004901No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)