FastQCFastQC Report
Thu 12 May 2022
EGAF00004918793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004918793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90912165
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGAACTGAATCTTGCACTGCTTTGGTTTCTATCTAGGAAGCTCAGCGA2020970.22229918295312845No Hit
CTTGAACTTTATTTTGGAGAGAGAAATTTAGAAAGACACAAGGTACACAG1190480.13094837198080148No Hit
CGGCAATAGCAGGTGGCTCTTGCCTGAGAACCTGAGGTTCTAAGAGCAGA1149420.12643192470446613No Hit
CGACAGCAGAGTCTGTAGAGGCGGCCACTGATTTCACACACCCCGGAGAG1046770.11514080651362775No Hit
CGGCCACTGATTTCACACACCCCGGAGAGGGACTCACGGGTAGCACAACG909250.10001411802259906No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)