FastQCFastQC Report
Wed 15 Mar 2023
EGAF00004918794

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004918794
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90912165
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGAACTGAATCTTGCACTGCTTTGGTTTCTATCTAGGAAGCTCAGCGA2137880.2351588481035514No Hit
CTTGAACTTTATTTTGGAGAGAGAAATTTAGAAAGACACAAGGTACACAG1341330.14754131089057224No Hit
CGGCAATAGCAGGTGGCTCTTGCCTGAGAACCTGAGGTTCTAAGAGCAGA1204070.13244322143246726No Hit
CGACAGCAGAGTCTGTAGAGGCGGCCACTGATTTCACACACCCCGGAGAG962320.10585162062744849No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)