FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004918832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004918832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences597104
Sequences flagged as poor quality0
Sequence length125
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATTTCACTGTCTCTTATACACATCTGACGCTGCCGACGAAGGCTTAGG21270.35621935207267075No Hit
ACACAGCACTGTGCAAACACGAAAGTGGACGTATACGGTGTGACGCCTGC20340.34064417588895735No Hit
GTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGACTGAT15350.257074144537635No Hit
GTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAAT12370.2071665907446609No Hit
GGTCTATACCCTGCAACTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGG10190.1706570379699349No Hit
GCCTTTTTCTCTGTATTTCACTGTCTCTTATACACATCTGACGCTGCCGA9090.15223478656984377No Hit
GTATACGTCCACTTTCGTGTTTGCACAGTGCTGTGTTTTTAATAAACAGT8940.14972266137892226No Hit
TCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT8010.1341474851952089No Hit
GACGTATACGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATGGGG7830.13113293496610307No Hit
CGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGC7450.12476888448243523No Hit
ATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAGTAAAGGTTC6820.11421795868056486No Hit
GGTATCAACGCAGAGTACGGGGGGTTGTTTTGGGATGCCTTTTTCTCTGT6630.11103593343873094No Hit
TTTTATGACTGTCTCTTATACACATCTGACGCTGCCGACGAAGGCTTAGG6550.10969613333690613No Hit
GTGCAAACACGAAAGTGGACGTATACGGTGTGACGCCTGCCCGGTGCCGG6210.10400198290415069No Hit
ATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGAT6160.10316460784051018No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)