FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004918850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004918850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3396468
Sequences flagged as poor quality0
Sequence length125
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTTACCTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAG149620.44051644237484355No Hit
GATTTACCTATTTGGATTGGTACGTGCAGAAGCCAGGGCAGTCTCCACAA137200.40394904353581423No Hit
CCTCCAACATTAGCATAATTAAAGCCAAGGAGGAGGAGGGGGGTGAGGTG56810.1672619909859301No Hit
AGTTCGAGGAGCTTGTAGAACTTGCATGCAGTAATAAACCCCAACATCCT56400.16605485463134056No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC53420.15728103429798249No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT52370.1541895875362288No Hit
GTACCTGCAGAAGCCAGGGCAGTCTCCACAACTCCTGATCTACATGGGTT48250.1420593392901096No Hit
ATTTAAAGGAGTTTGTAGAGCCTGCATGCAGTAATAAATCCCAACATCCT46560.1370835821211918No Hit
GTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATTTATTTGGGTT45270.13328551895675156No Hit
GGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACA44900.13219615200260976No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC41980.12359898576992336No Hit
GATCAGGACTCCTCAGTTCACCTTCTCACAATGAGGCTCCCTGCTCAGCT41950.12351065871958752No Hit
GGATACAACTATTTGGATTGGTACGTGCAGAAGCCAGGGCAGTCTCCACA40170.11826992039966222No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG37140.10934888831574446No Hit
TCCACTTTGGTCCCAGGGCCGAAAGTTCGAGGAGCTTGTAGAACTTGCAT36420.1072290391076848No Hit
CCTCGAACTTTCGGCCCTGGGACCAGACTGGATATCAACCGAACTGTGGC36300.10687573090634153No Hit
ATTAAAGCCAAGGAGGAGGAGGGGGGTGAGGTGAAAGATGAGCTGGAGGA34760.10234160898910281No Hit
TCCACTTTGGTCCCAGGGCCGAAATTTAAAGGAGTTTGTAGAGCCTGCAT34680.10210607018820728No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)