FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004918960

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004918960
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7367222
Sequences flagged as poor quality0
Sequence length125
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA307750.036.504021
CAACGCA359950.030.5441285
ATCAACG360400.030.4433083
TCAACGC363800.030.2552224
AACGCAG365800.030.2155386
CATGGGT92400.029.9895944
TATCAAC372200.029.9255182
ATACGAC8750.029.2240683
ATATACG11100.027.8603921
ACATGGG586050.027.651083
GTACATG631850.027.4178471
CATGGGG149500.027.2462064
TACATGG631950.027.1107042
CGCAGAG407900.026.8990468
ACGCAGA413850.026.6426567
GGTATCA204300.026.3734321
ATAGGGG40600.026.3649373
GGGGTTA40650.025.449746
GCAGAGT437100.025.0201559
TAGGGGT43450.024.9079654
Produced by FastQC (version 0.11.5)