EGAF00004919268 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004919268
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7792407
Sequences flagged as poor quality	0
Sequence length	150
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACACAGCACTGTGCAAACACGAAAGTGGACGTATACGGTGTGACGCCTGC	25900	0.33237483617064667	No Hit
GTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGACTGAT	16039	0.20582857132590737	No Hit
GTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAAT	10433	0.1338867438520601	No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC	10170	0.1305116634693234	No Hit
GTATACGTCCACTTTCGTGTTTGCACAGTGCTGTGTTTTTAATAAACAGT	9308	0.11944961293731192	No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT	8928	0.11457307093944143	No Hit
GGTCTATACCCTGCAACTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGG	8581	0.11012001811507022	No Hit
GTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGG	7978	0.10238171594476521	No Hit
GACCATAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTT	7895	0.10131657650838823	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	20870	78.97806	1
TATCAAC	30980	53.24222	2
ATCAACG	32745	49.69239	3
ACTGTGC	15860	45.67249	8
CGCAGAG	36375	44.776436	8
CAACGCA	36720	44.474537	5
GCAGAGT	36495	44.372143	9
ACGCAGA	36635	44.24245	7
GGTCTAT	3930	42.42242	1
AACGCAG	40440	41.380527	6
CACTGTG	12865	41.249397	7
CTGTGCA	13010	40.789135	9
TCAACGC	41055	40.212814	4
GGTATCA	12500	38.090813	1
TAGTACT	5425	37.426205	4
GTCTAAC	3445	36.348938	1
ATACGGG	4340	35.9995	3
TACTGTG	6080	35.883842	7
GTCTATA	5055	33.755123	2
TCTATAC	5690	33.65858	3