FastQCFastQC Report
Wed 31 Jul 2024
EGAF00004919394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42756375
Total Bases4.3 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC910260.21289456835384196No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG878430.20545006446407113No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT703060.16443395867867658No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA608160.14223843812764764No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT514460.12032357747821232No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT491090.11485772589467654No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA482400.11282528044063604No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)