FastQCFastQC Report
Wed 31 Jul 2024
EGAF00004919403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49527383
Total Bases5 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCA823860.1663443432898524No Hit
CTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTG659660.13319096629838084No Hit
GGGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTC558770.1128204169398573No Hit
CTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAA510810.10313688490264063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)