FastQCFastQC Report
Wed 31 Jul 2024
EGAF00004919426

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919426
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41476783
Total Bases4.1 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC607610.1464940036453647No Hit
CGCAAAACTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT452750.10915745321906957No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA436580.10525888664026813No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)