FastQCFastQC Report
Mon 5 Aug 2024
EGAF00004919438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50479936
Total Bases5 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC847890.16796574385514276No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG781490.154812002931224No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT572420.11339554788659004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)