FastQCFastQC Report
Wed 31 Jul 2024
EGAF00004919482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44423831
Total Bases4.4 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCAGTCGTGAAGAGGGAGCTCTATTGCCACCATGAGTTTCTCCGGCAA647970.1458609006503739No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT645730.14535666678544676No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC501350.1128560929380449No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG470240.1058530949300613No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)