FastQCFastQC Report
Wed 31 Jul 2024
EGAF00004919498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39372346
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG593730.15079873574208658No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT579300.14713372680408732No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC530760.13480527677979867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)