FastQCFastQC Report
Wed 31 Jul 2024
EGAF00004919528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44644698
Total Bases4.5 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC777280.17410354080567417No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG586950.1314713787514029No Hit
CCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCG473230.10599914910388687No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT465740.10432145828380338No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)