FastQCFastQC Report
Wed 31 Jul 2024
EGAF00004919530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48134786
Total Bases4.8 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC870110.18076532011589289No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT811550.16859948229540275No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA671590.13952279750449081No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT660560.13723131541500985No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC635410.13200640385105275No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG579770.12044719592188485No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA540020.11218913490131648No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA514630.1069143633462918No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)