FastQCFastQC Report
Wed 31 Jul 2024
EGAF00004919550

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919550
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46297709
Total Bases4.6 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC701100.15143297911350215No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA543380.11736649863171415No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT524030.11318702616580877No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT504030.1088671579839944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)