FastQCFastQC Report
Mon 5 Aug 2024
EGAF00004919560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57496980
Total Bases5.8 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG873990.15200624450188513No Hit
GGTCAGTCGTGAAGAGGGAGCTCTATTGCCACCATGAGTTTCTCCGGCAA760040.1321878122990112No Hit
GGAGTATCAATCACCTGAGCTCACCATAGTCTAATAGAAAACAACCGAAA750570.13054076927170782No Hit
CCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGC668630.11628958599216863No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC649640.11298680382865325No Hit
CCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCG631970.10991359894032696No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT597160.10385936791810632No Hit
CCCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGC591720.1029132312688423No Hit
CAATCACCTGAGCTCACCATAGTCTAATAGAAAACAACCGAAACCAAATA590490.10269930698968885No Hit
AAATAATTCAAGCACTGCTTATTACAATTTTACTGGGTCTCTATTTTACC577220.10039135968532607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)