FastQCFastQC Report
Wed 31 Jul 2024
EGAF00004919576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52204039
Total Bases5.2 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT819350.15695145733838717No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT666440.12766062028265668No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC655590.125582237037253No Hit
CACATGCCTATCATATAGTGAAACCCAGCCCATGACCCCTAACAGGGGCC652410.12497308876809321No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA590120.11304106182282178No Hit
CTATCATATAGTGAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG527220.10099218568126501No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)