FastQCFastQC Report
Wed 31 Jul 2024
EGAF00004919588

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919588
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45308170
Total Bases4.5 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC858460.18947134699988988No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC634350.14000786171677204No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG609320.13448347174472064No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA602620.1330047097466086No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT570860.12599493645406556No Hit
CGCAAAACTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT456770.10081404744442338No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA454680.10035276198531082No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)