FastQCFastQC Report
Mon 5 Aug 2024
EGAF00004919640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54786923
Total Bases5.5 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC905620.1652985695144807No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA684480.12493492288296607No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC604570.11034932551331639No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG552400.10082698019014502No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)