FastQCFastQC Report
Wed 31 Jul 2024
EGAF00004919656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48688461
Total Bases4.9 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN693380.1424115664695173No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC515340.10584438066341838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)