FastQCFastQC Report
Wed 31 Jul 2024
EGAF00004919710

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919710
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45186963
Total Bases4.5 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG769320.17025264565799653No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC759960.16818125174732368No Hit
GGTCAGTCGTGAAGAGGGAGCTCTATTGCCACCATGAGTTTCTCCGGCAA610700.135149600560675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)