FastQCFastQC Report
Wed 31 Jul 2024
EGAF00004919736

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919736
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52950740
Total Bases5.3 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC1102640.20823882725718282No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG577130.10899375532806528No Hit
GGTCAGTCGTGAAGAGGGAGCTCTATTGCCACCATGAGTTTCTCCGGCAA576930.10895598437340064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)