FastQCFastQC Report
Mon 5 Aug 2024
EGAF00004919741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44627941
Total Bases4.5 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCA920760.20631917569309327No Hit
CTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTG801170.1795220621986571No Hit
GCCAGTATCAGGCGGCGGCTTCGAAGCCAAAGTGATGTTTGGATGTAAAG620280.13898915928028138No Hit
CTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAA524170.11745332369243744No Hit
GGGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTC471510.10565354113020808No Hit
CGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCC456520.10229465885508812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)