FastQCFastQC Report
Wed 31 Jul 2024
EGAF00004919784

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919784
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44659999
Total Bases4.5 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC922490.2065584461835747No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT683130.1529623858701833No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG624020.13972682802791825No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)