FastQCFastQC Report
Wed 31 Jul 2024
EGAF00004919808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40810502
Total Bases4.1 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC894220.21911516795358213No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG869690.2131044602195778No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT625690.15331592833628951No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA620530.152051547907938No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT558970.13696719535574448No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA502490.12312762043456363No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG495500.12141482601708746No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT433720.10627656577221227No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)