FastQCFastQC Report
Wed 31 Jul 2024
EGAF00004919816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52562150
Total Bases5.3 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC1091230.2076075655200558No Hit
CGCAAAACTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT686490.13060538809770908No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA685100.13034093925001167No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT548830.10441543962718419No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)