FastQCFastQC Report
Mon 5 Aug 2024
EGAF00004919882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004919882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47513200
Total Bases4.7 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT813590.17123452009125886No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC770040.16206864618674388No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT598430.12595026224291353No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA498350.10488664202789962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)